DreEX0000369 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68227472-68228920:-
Coord C1 exon
chr5:68228822-68228920
Coord A exon
chr5:68227896-68228093
Coord C2 exon
chr5:68227472-68227570
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCCCTCTTGGCAGAAT
3' ss Score
9.65
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTGGACTCACGCCGCTGCATGTGGCCGTCCATCATAACAATCTAGATGTGGTCAATCTTTTACTCAGCAAAGGAGGATCACCACACAGCGCCGCTCGG
Seq A exon
AATGGCTATACTCCGCTCCACATTGCTTCCAAACAGAACCAGGCGGAGGTGGCGAGCAGTTTACTGCAGCACGGGGCGTCTGCCAATGCTGAGTCTCTGCAAGGGGTCACACCTCTACACCTCGCCTCTCAAGAGGGTCAACCTGACATGGTGTTACTGCTCATCTCCAAGCAGGCCAATGTAAACCTTGGCAATAAG
Seq C2 exon
AGCGGTCTGACTCCTCTTCATCTTGTGGCTCAGGAAGGGCATGTTGGGATTGCTGATATACTAGTGAAACATGGAGCATCTGTTTATGCTGCCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093_MULTIEX2-16/28=15-17
Average complexity
S
Mappability confidence:
93%=100=93%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(34.4=94.1)
A:
PF0002325=Ank=WD(100=47.8),PF127962=Ank_2=PU(28.3=38.8)
C2:
PF127962=Ank_2=FE(35.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGACTCACGCCGCTG
R:
CCGTGTGGCAGCATAAACAGA
Band lengths:
198-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]