GgaEX0004695 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2676002-2677597:-
Coord C1 exon
chr22:2677499-2677597
Coord A exon
chr22:2676293-2676490
Coord C2 exon
chr22:2676002-2676100
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCCATGGTCCCCTCCCACAGAAC
3' ss Score
9.3
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AACGGCCTGACCCCACTGCACGTAGCTGTGCACCACAACAACCTGGAGATCGTCAAGCTTCTGCTTCCCAAGGGGAGCTCTCCACACAGCTCAGCCTGG
Seq A exon
AACGGGTACACCCCTCTGCACATTGCCGCCAAGCAGAACCAGATGGAGGTGGCCAGCAGCTTGCTGCAGTATGGTGCTTCTGCAAATGCGGAGTCTGTTCAGGGAGTCACCCCTCTGCACCTGGCTTCTCAGGAAGGGCATACAGACATGGTAGCACTGCTTTTCTCCAAGCAAGCCAATGGAAACTTAGGCAACAAG
Seq C2 exon
AGTGGTCTGACTCCTCTCCATCTCGTGGCCCAAGAGGGACACGTACCAGTGGCTGATGTTCTGGTGAAACATGGAGTCACAGTGGATGCGACAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'19-17,'19-16,20-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.061 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(36.9=93.9),PF127962=Ank_2=PU(7.0=15.2)
A:
PF127962=Ank_2=PD(90.1=97.0)
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCCTGACCCCACTG
R:
CTGGTTGTCGCATCCACTGTG
Band lengths:
197-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]