HsaEX6080532 @ hg38
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1 [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr8:41706143-41714254:-
Coord C1 exon
chr8:41714156-41714254
Coord A exon
chr8:41708778-41708975
Coord C2 exon
chr8:41706143-41706241
Length
198 bp
Sequences
Splice sites
3' ss Seq
GGCGGCTTCTTCTGTTTCAGAAT
3' ss Score
9.32
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AATGGCCTGACCCCCCTGCACGTGGCCGTCCATCACAACAACCTGGACATCGTCAAGCTGCTGCTTCCCCGGGGCGGCTCCCCGCACAGCCCTGCCTGG
Seq A exon
AATGGCTACACCCCTTTGCACATCGCTGCCAAGCAGAACCAGGTGGAGGTGGCCCGTAGTCTGCTGCAGTATGGGGGCTCAGCAAACGCCGAGTCGGTGCAAGGTGTGACGCCCCTTCACCTGGCCGCCCAGGAGGGCCACGCAGAGATGGTGGCTCTGCTGCTCTCGAAACAAGCCAATGGCAACCTGGGGAACAAG
Seq C2 exon
AGCGGACTCACTCCCCTCCATCTGGTAGCACAAGAAGGCCACGTTCCAGTGGCAGATGTGCTGATCAAACACGGCGTCATGGTGGACGCCACCACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'30-42,'30-40,31-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.091 C2=0.060
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(8.3=18.2)
A:
PF127962=Ank_2=PD(88.9=97.0)
C2:
PF127962=Ank_2=PU(15.4=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCGTCCATCACAACAA
R:
CACCATGACGCCGTGTTTGAT
Band lengths:
162-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains