BtaEX6107171 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003275 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr27:36309018-36315394:-
Coord C1 exon
chr27:36315296-36315394
Coord A exon
chr27:36311813-36312010
Coord C2 exon
chr27:36309018-36309116
Length
198 bp
Sequences
Splice sites
3' ss Seq
GGGGGCCCCTTCCATTTCAGAAC
3' ss Score
8.59
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGCGGCCTGACCCCCCTGCATGTGGCCGTGCACCACAACCACCTGGACGTCGTCCGGCTGCTGCTGCCCCGGGGCGGATCCCCGCACAGCCCCGCCTTG
Seq A exon
AACGGCTACACACCTCTGCACATCGCCGCCAAGCAGAACCAGCTGGAGGTGGCCCGCAGTCTGCTGCAGTACGGGGGCTCGGCGAACGCGGAGTCGGTGCAAGGCGTGACCCCCCTCCACCTGGCGGCTCAGGAGGGCCACGCAGAGATGGTGGCTCTCCTGCTGTCCAAGCAGGCCAACGGGAACCTGGGCAACAAG
Seq C2 exon
AGTGGACTCACTCCCCTCCATCTGGTCGCACAAGAAGGCCACATTCCAGTGGCAGACGTGCTGATCAAACACGGTGTCACGGTGGACGCCACCACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003275-'16-22,'16-21,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.121 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(10.8=24.2)
A:
PF127962=Ank_2=PD(86.5=97.0),PF127962=Ank_2=PU(7.0=7.6)
C2:
PF127962=Ank_2=FE(45.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACCACAACCACCTGG
R:
TGGCGTCCACCGTGACAC
Band lengths:
163-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]