MmuEX6034903 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23099598-23106130:+
Coord C1 exon
chr8:23099598-23099696
Coord A exon
chr8:23104790-23104987
Coord C2 exon
chr8:23106032-23106130
Length
198 bp
Sequences
Splice sites
3' ss Seq
GGTACCTCCTTTTGTTTCAGAAT
3' ss Score
8.68
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACGGCTTGACTCCTCTGCATGTGGCCGTCCATCACAACAACCTGGACATTGTCAAACTTCTTCTTCCCCGAGGTGGCTCCCCCCACAGCCCTGCCTGG
Seq A exon
AATGGCTACACTCCTTTGCACATCGCTGCCAAGCAGAACCAGATAGAGGTGGCCCGCAGTCTACTGCAGTACGGAGGGTCAGCGAATGCAGAGTCGGTACAAGGCGTGACCCCACTTCACCTGGCTGCCCAAGAGGGCCACACAGAAATGGTTGCTCTTCTCCTGTCCAAGCAAGCCAACGGCAACCTGGGGAACAAG
Seq C2 exon
AGTGGACTCACTCCCCTCCACCTGGTGTCACAAGAAGGCCATGTTCCAGTGGCAGACGTGCTGATCAAACATGGCGTCACCGTGGATGCTACCACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'13-40,'13-32,22-40=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.167 C2=0.152
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(12.0=27.3)
A:
PF127962=Ank_2=PD(88.9=97.0),PF127962=Ank_2=PU(8.3=9.1)
C2:
PF127962=Ank_2=FE(44.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCTTGACTCCTCTGCAT
R:
GTGGTAGCATCCACGGTGAC
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types