MmuEX6034904 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23098921-23104987:+
Coord C1 exon
chr8:23098921-23099019
Coord A exon
chr8:23099598-23099696
Coord C2 exon
chr8:23104790-23104987
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTGTCCCTCTGCAGAAC
3' ss Score
13.28
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AAAGGATTTACCCCTCTGCACGTGGCTGCTAAGTACGGGAAGGTACGGTTGGCGGAGCTGCTGCTGGAACACGATGCACACCCCAATGCAGCTGGGAAG
Seq A exon
AACGGCTTGACTCCTCTGCATGTGGCCGTCCATCACAACAACCTGGACATTGTCAAACTTCTTCTTCCCCGAGGTGGCTCCCCCCACAGCCCTGCCTGG
Seq C2 exon
AATGGCTACACTCCTTTGCACATCGCTGCCAAGCAGAACCAGATAGAGGTGGCCCGCAGTCTACTGCAGTACGGAGGGTCAGCGAATGCAGAGTCGGTACAAGGCGTGACCCCACTTCACCTGGCTGCCCAAGAGGGCCACACAGAAATGGTTGCTCTTCTCCTGTCCAAGCAAGCCAACGGCAACCTGGGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'20-32,'20-31,21-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.277 C2=0.167
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(45.1=100)
A:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(12.0=27.3)
C2:
PF127962=Ank_2=PD(88.9=97.0),PF127962=Ank_2=PU(8.3=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTACCCCTCTGCACGTGG
R:
ACCCTCCGTACTGCAGTAGAC
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types