BtaEX6107170 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003275 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr27:36311813-36316561:-
Coord C1 exon
chr27:36316463-36316561
Coord A exon
chr27:36315296-36315394
Coord C2 exon
chr27:36311813-36312010
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCGTCCCCCCACAGAGC
3' ss Score
11.77
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
AAAGGATTTACCCCTCTCCACGTGGCAGCCAAGTACGGGAAGGTGCGCATGGCAGAGCTGCTGCTGGAGCACGATGCACACCCTAACGCCGCCGGGAAG
Seq A exon
AGCGGCCTGACCCCCCTGCATGTGGCCGTGCACCACAACCACCTGGACGTCGTCCGGCTGCTGCTGCCCCGGGGCGGATCCCCGCACAGCCCCGCCTTG
Seq C2 exon
AACGGCTACACACCTCTGCACATCGCCGCCAAGCAGAACCAGCTGGAGGTGGCCCGCAGTCTGCTGCAGTACGGGGGCTCGGCGAACGCGGAGTCGGTGCAAGGCGTGACCCCCCTCCACCTGGCGGCTCAGGAGGGCCACGCAGAGATGGTGGCTCTCCTGCTGTCCAAGCAGGCCAACGGGAACCTGGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003275-'15-21,'15-20,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.333 C2=0.121
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.4=100)
A:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(10.8=24.2)
C2:
PF127962=Ank_2=PD(86.5=97.0),PF127962=Ank_2=PU(7.0=7.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTTACCCCTCTCCACGT
R:
CCCCGTACTGCAGCAGACT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]