GgaEX6024768 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2626024-2627511:-
Coord C1 exon
chr22:2627413-2627511
Coord A exon
chr22:2627230-2627328
Coord C2 exon
chr22:2626024-2626221
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCTTCCCCTCCCTAGAAC
3' ss Score
11.5
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AAAGGATTTACCCCTCTCCACGTTGCAGCCAAGTATGGGAAGGTGGATGTGGCAGAGCTGCTGCTGGTGCATGATGCTCACCCCAATGCAGCGGGGAAG
Seq A exon
AACGGCCTGACCCCACTGCACGTAGCTGTGCACCACAACAACCTGGAGATCGTCAAGCTTCTGCTTCCCAAGGGGAGCTCTCCACACAGCTCAGCCTGG
Seq C2 exon
AACGGGTACACCCCTCTGCACATTGCCGCCAAGCAGAACCAGATGGAGGTGGCCAGCAGCTTGCTGCAGTATGGTGCTTCTGCAAATGCGGAGTCTGTTCAGGGAGTCACCCCTCTGCACCTGGCTTCTCAGGAAGGGCATACAGACATGGTAGCACTGCTTTTCTCCAAGCAAGCCAATGGAAACTTAGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'26-34,'26-33,27-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.212 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.4=100)
A:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(7.0=15.2)
C2:
PF127962=Ank_2=PD(90.1=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCTCACCCCAATGCAG
R:
TATGCCCTTCCTGAGAAGCCA
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]