GgaEX6024768 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2676293-2677948:-
Coord C1 exon
chr22:2677682-2677948
Coord A exon
chr22:2677499-2677597
Coord C2 exon
chr22:2676293-2676490
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCTTCCCCTCCCTAGAAC
3' ss Score
11.5
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACCTGCATGACCAAGGTAGGCTGCTGTGCCTGCTGCAGAAGATGGCTGGCAGGGCTGCAGGACAGCATCCCTGTCACAGAAGGGGCAGCCTCCTCTTGTGCTACAGTGTACATCTGCATTCTCCTCATCATCCCCTTACACCCAGTGATGGGCTGCCTATCTCCTCAGAAAGGATTTACCCCTCTCCACGTTGCAGCCAAGTATGGGAAGGTGGATGTGGCAGAGCTGCTGCTGGTGCATGATGCTCACCCCAATGCAGCGGGGAAG
Seq A exon
AACGGCCTGACCCCACTGCACGTAGCTGTGCACCACAACAACCTGGAGATCGTCAAGCTTCTGCTTCCCAAGGGGAGCTCTCCACACAGCTCAGCCTGG
Seq C2 exon
AACGGGTACACCCCTCTGCACATTGCCGCCAAGCAGAACCAGATGGAGGTGGCCAGCAGCTTGCTGCAGTATGGTGCTTCTGCAAATGCGGAGTCTGTTCAGGGAGTCACCCCTCTGCACCTGGCTTCTCAGGAAGGGCATACAGACATGGTAGCACTGCTTTTCTCCAAGCAAGCCAATGGAAACTTAGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(60.7=57.3)
A:
PF127962=Ank_2=PD(36.9=93.9),PF127962=Ank_2=PU(7.0=15.2)
C2:
PF127962=Ank_2=PD(90.1=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCTCACCCCAATGCAG
R:
TATGCCCTTCCTGAGAAGCCA
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]