MmuEX6034905 @ mm9
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:24208318-24210168:+
Coord C1 exon
chr8:24208318-24208515
Coord A exon
chr8:24209393-24209491
Coord C2 exon
chr8:24210070-24210168
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGTGTTTCTCCTCAGAAA
3' ss Score
10.15
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGACCAGACACCGCTTCACTGTGCTGCTCGAATCGGCCACACAGGCATGGTGAAGCTCCTGCTGGAGAATGGTGCCAGCCCCAATCTGGCTACCACTGCTGGCCACACACCCCTACACACCGCAGCCCGTGAGGGACACGTGGACACAGCCCTGGCCCTGCTGGAGAAGGAGGCATCCCAAGCCTGCATGACCAAG
Seq A exon
AAAGGATTTACCCCTCTGCACGTGGCTGCTAAGTACGGGAAGGTACGGTTGGCGGAGCTGCTGCTGGAACACGATGCACACCCCAATGCAGCTGGGAAG
Seq C2 exon
AACGGCTTGACTCCTCTGCATGTGGCCGTCCATCACAACAACCTGGACATTGTCAAACTTCTTCTTCCCCGAGGTGGCTCCCCCCACAGCCCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'16-22,'16-20,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.329 A=0.209 C2=0.277
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=48.5),PF127962=Ank_2=PU(9.9=10.6)
A:
PF127962=Ank_2=FE(45.1=100)
C2:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(12.0=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000072612, ENSMUSP00000081050, ENSMUSP00000081051, ENSMUSP00000081051f2840A, ENSMUSP00000106313, ENSMUSP00000106316, ENSMUSP00000112850, ENSMUSP00000113495, ENSMUSP00000113531, ENSMUSP00000113656, ENSMUSP00000116533, ENSMUSP00000117966, ENSMUSP00000121785, ENSMUSP00000133322, ENSMUSP00000133901
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGGCATGGTGAAGCTC
R:
CACATGCAGAGGAGTCAAGCC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: