BtaEX6107202 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001244 | PLAT
Description
Bos taurus plasminogen activator, tissue (PLAT), mRNA. [Source:RefSeq mRNA;Acc:NM_174146]
Coordinates
chr27:36747441-36750387:-
Coord C1 exon
chr27:36750290-36750387
Coord A exon
chr27:36749124-36749166
Coord C2 exon
chr27:36747441-36747578
Length
43 bp
Sequences
Splice sites
3' ss Seq
CGCCCCTGGTTTCTTTGCAGGAA
3' ss Score
11.07
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AATTTGCGGGACGCTCAGAGGAAATGATGAGCGCAATGAAGACAGAGTTCCTGTGCGTGCTGCTGCTCTGTGGAGCTGTCTTCACGTCGCCCAGCCAG
Seq A exon
GAAACCTACAGACGACTCAGGAGAGGCGCCAGATCGTACAAAG
Seq C2 exon
TGACCTGCAGAGATGGAAAAACGCAGATGACGTACCGCCAACACGACTCCTGGCTGCGACCCCTGCTCAGGGGCAACCAAGTGGAGCACTGCTGGTGCGACGGCGGCCGGGCCCAGTGCCACTCGGTGCCCGTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001244-'6-2,'6-1,8-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0003913=fn1=WD(100=80.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTGCTCTGTGGAG
R:
CAGCAGTGCTCCACTTGGTTG
Band lengths:
136-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]