MmuEX6034862 @ mm10
Exon Skipping
Gene
ENSMUSG00000031538 | Plat
Description
plasminogen activator, tissue [Source:MGI Symbol;Acc:MGI:97610]
Coordinates
chr8:22767080-22771831:+
Coord C1 exon
chr8:22767080-22767167
Coord A exon
chr8:22768446-22768488
Coord C2 exon
chr8:22771694-22771831
Length
43 bp
Sequences
Splice sites
3' ss Seq
CCATTCTGGTCTCTTTGCAGGGA
3' ss Score
11.08
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGACACAGAAGAAACGGGGAGCAAAATGAAGAGAGAGCTGCTGTGTGTACTGCTGCTTTGTGGACTGGCTTTCCCATTGCCTGACCAG
Seq A exon
GGAATACATGGGAGGTTCAGAAGAGGAGCCCGGTCCTACAGAG
Seq C2 exon
CGACCTGCAGAGATGAGCCAACGCAGACAACTTACCAACAGCACCAGTCGTGGCTCCGACCCATGCTCAGAAGCAGCCGGGTGGAATATTGCCGGTGCAACAGCGGCCTGGTACAATGCCACTCAGTGCCTGTCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031538-'10-7,'10-5,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0003913=fn1=WD(100=80.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAAGAAACGGGGAGCAA
R:
CACGACTGGTGCTGTTGGTAA
Band lengths:
137-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types