DreEX6047909 @ danRer10
Exon Skipping
Gene
ENSDARG00000062707 | plat
Description
plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
Coordinates
chr8:2230173-2230902:-
Coord C1 exon
chr8:2230814-2230902
Coord A exon
chr8:2230679-2230721
Coord C2 exon
chr8:2230173-2230307
Length
43 bp
Sequences
Splice sites
3' ss Seq
ACATTCTGCGTCTCTGATAGGAG
3' ss Score
7.56
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAGAATACAGAGATCTGCAGGAGAGCATGAATTTATTACTGAACCTGCTGCTGCTTCTGTCTGCTCTGAGCTGTGCTGCAGATCCCACA
Seq A exon
GAGCTGCATGACAGACAAAAAAGAGGAACTCGCAATTATAGAG
Seq C2 exon
AAGCGTGTGTAGACTCTAATTCGGCCGCGGTCAGAGACATTGGTGTGACGTGGCTGCGATGGAAAGGACTGAAAGTCGAGTTCTGCCGCTGTGCGTTAAGAGGAAGAGCTCGCTGTCATGAGGTCCCTGTGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062707-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGAACCTGCTGCTGCTTC
R:
CGGCAGAACTCGACTTTCAGT
Band lengths:
141-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]