GgaEX0004865 @ galGal4
Exon Skipping
Gene
ENSGALG00000003709 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:HGNC:9051]
Coordinates
chr22:2715603-2717064:-
Coord C1 exon
chr22:2716973-2717064
Coord A exon
chr22:2716161-2716200
Coord C2 exon
chr22:2715603-2715734
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTCACCTTCTCTACTTGCAGGGC
3' ss Score
11.34
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATCCGGAGGTGATGTGGAAAACACTCAGAATGAAAGGCAAGCTCCTGAGTCTCCTCCTGCTGGTGGGAGTAATCAAGACTGCCCAATGCCAG
Seq A exon
GGCACACACATGCGTTACAAACGGGGAGCCAGATCTCAAG
Seq C2 exon
CCATTTGCACAGACTATTCATCTGGACAAATATACCAGCACAGAGGGAGCTGGCTGAGACTTTCAGGCAGCAGAATAGAATACTGTAGGTGTGACCGTGGTTGGAGTTACTGCCACACTGTGCCCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003709_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGACTGCCCAATGCCAG
R:
GCAGTAACTCCAACCACGGTC
Band lengths:
134-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]