HsaEX6080565 @ hg19
Exon Skipping
Gene
ENSG00000104368 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:9051]
Coordinates
chr8:42046452-42050729:-
Coord C1 exon
chr8:42050632-42050729
Coord A exon
chr8:42048890-42048932
Coord C2 exon
chr8:42046452-42046589
Length
43 bp
Sequences
Splice sites
3' ss Seq
CACCTCTGGTTTCTTCGCAGGAA
3' ss Score
9.78
5' ss Seq
AAGGTCGGG
5' ss Score
3.63
Exon sequences
Seq C1 exon
AATTTAAGGGACGCTGTGAAGCAATCATGGATGCAATGAAGAGAGGGCTCTGCTGTGTGCTGCTGCTGTGTGGAGCAGTCTTCGTTTCGCCCAGCCAG
Seq A exon
GAAATCCATGCCCGATTCAGAAGAGGAGCCAGATCTTACCAAG
Seq C2 exon
TGATCTGCAGAGATGAAAAAACGCAGATGATATACCAGCAACATCAGTCATGGCTGCGCCCTGTGCTCAGAAGCAACCGGGTGGAATATTGCTGGTGCAACAGTGGCAGGGCACAGTGCCACTCAGTGCCTGTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104368-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0003913=fn1=WD(100=80.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGACGCTGTGAAGCAATC
R:
AGCCATGACTGATGTTGCTGG
Band lengths:
148-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)