BtaEX6107204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001244 | PLAT
Description
Bos taurus plasminogen activator, tissue (PLAT), mRNA. [Source:RefSeq mRNA;Acc:NM_174146]
Coordinates
chr27:36746649-36747578:-
Coord C1 exon
chr27:36747441-36747578
Coord A exon
chr27:36747091-36747201
Coord C2 exon
chr27:36746649-36746823
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCTTCTACTTGGCAGGTT
3' ss Score
6.87
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TGACCTGCAGAGATGGAAAAACGCAGATGACGTACCGCCAACACGACTCCTGGCTGCGACCCCTGCTCAGGGGCAACCAAGTGGAGCACTGCTGGTGCGACGGCGGCCGGGCCCAGTGCCACTCGGTGCCCGTCAGAA
Seq A exon
GTTGCAGTGAACCTTGGTGTTTCAATGGGGGGACATGTCGGCAGGCCCTCTATTCTTCAGACTTTGTCTGCCAGTGCCCAGAAGGGTTCATGGGGAAGCTCTGTGAAATAG
Seq C2 exon
ATGCTACCGCCACGTGCTATAAGGACCAGGGTGTCGCCTACAGAGGCACGTGGAGCACGGCAGAGAGCGGGGCTGAGTGCGCCAATTGGAACAGCAGCGGCCTGGCCATGAAGCCGTACAGCGGGCGCAGGCCCAACGCCATCAGGCTGGGCCTTGGGAACCACAACTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001244-'9-4,'9-3,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=WD(100=80.9)
A:
PF0000822=EGF=WD(100=86.8)
C2:
PF0005113=Kringle=PU(64.6=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACCAAGTGGAGCACTG
R:
CTGCAGTAGTTGTGGTTCCCA
Band lengths:
242-353
Functional annotations
There are 1 annotated functions for this event
PMID: 1900431
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: de novo protein sequencing by mass spectrometry. ELM ID: ELMI000225; ELM sequence: CFNGGTC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]