GgaEX1044178 @ galGal4
Exon Skipping
Gene
ENSGALG00000003709 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:HGNC:9051]
Coordinates
chr22:2714052-2715740:-
Coord C1 exon
chr22:2715603-2715740
Coord A exon
chr22:2715127-2715240
Coord C2 exon
chr22:2714052-2714226
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGCTTTTGTTTATTCCACAGCCT
3' ss Score
7.69
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTACAGCCATTTGCACAGACTATTCATCTGGACAAATATACCAGCACAGAGGGAGCTGGCTGAGACTTTCAGGCAGCAGAATAGAATACTGTAGGTGTGACCGTGGTTGGAGTTACTGCCACACTGTGCCCATCAGAG
Seq A exon
CCTGCACTAGAAATAAATGCTACAATGGGGGCCAGTGTTCACAGGCATATTACTCCCCACAGCTCTTCATCTGCCGCTGTCACCACGGTTTCTCTGGGAAGCAGTGTGAAATAG
Seq C2 exon
ATACTGAAGTTAAGTGCTACAAAAATGCTGGAGTAACATACAGGGGTACATGGAGCATAACAGAGAGTGGAGCTGAATGCCTGAATTGGAATATCAATGGCTTGATGGACCATAAATACAGTGGCCAAAGAAAGGATGCTGCTGAGCTGGGATTGGGCAATCACAACTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003709-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=87.2)
C2:
PF0005113=Kringle=PU(64.6=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCAGCACAGAGGGAGCTG
R:
AGCAGCATCCTTTCTTTGGCC
Band lengths:
244-358
Functional annotations
There are 1 annotated functions for this event
PMID: 1900431
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: de novo protein sequencing by mass spectrometry. ELM ID: ELMI000225; ELM sequence: CFNGGTC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]