DreEX6047910 @ danRer10
Exon Skipping
Gene
ENSDARG00000062707 | plat
Description
plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
Coordinates
chr8:2220198-2230307:-
Coord C1 exon
chr8:2230173-2230307
Coord A exon
chr8:2225065-2225175
Coord C2 exon
chr8:2220198-2220372
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTGTGTTTTGCAGAAT
3' ss Score
11.24
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
AAGCGTGTGTAGACTCTAATTCGGCCGCGGTCAGAGACATTGGTGTGACGTGGCTGCGATGGAAAGGACTGAAAGTCGAGTTCTGCCGCTGTGCGTTAAGAGGAAGAGCTCGCTGTCATGAGGTCCCTGTGACTA
Seq A exon
AATGCTTCGTGTCTAAGTGTTATAATGGAGGGACGTGTAAAGAAGCGCTTTACTCCAGTGACTTCATCTGCCAGTGTCCGCCCGGCTTTACAGGCACACAGTGTGAAATCA
Seq C2 exon
ATACTCTTGAGAGATGCTCCAGAGGTCAGGGGTTGGGATATCGAGGCTCGTGGAGCGTCAGTTCGTCAGGAATGGAGTGTATTAACTGGAACTCCAGCTCTCTGCGAGGGAAGAAGTTCACTGCGAGGAGACCAGAGGCGAGCACACTGGGTCTGGGGAACCACAACTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062707-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=86.8)
C2:
PF0005113=Kringle=PU(64.6=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGACTCTAATTCGGCCGCG
R:
CCTCGCAGTGAACTTCTTCCC
Band lengths:
255-366
Functional annotations
There are 1 annotated functions for this event
PMID: 1900431
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: de novo protein sequencing by mass spectrometry. ELM ID: ELMI000225; ELM sequence: CFNGGTC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]