MmuEX0035552 @ mm10
Exon Skipping
Gene
ENSMUSG00000031538 | Plat
Description
plasminogen activator, tissue [Source:MGI Symbol;Acc:MGI:97610]
Coordinates
chr8:22771694-22776195:+
Coord C1 exon
chr8:22771694-22771831
Coord A exon
chr8:22772206-22772316
Coord C2 exon
chr8:22772636-22776195
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTTTGCACTTGGCAGGTT
3' ss Score
6.61
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CGACCTGCAGAGATGAGCCAACGCAGACAACTTACCAACAGCACCAGTCGTGGCTCCGACCCATGCTCAGAAGCAGCCGGGTGGAATATTGCCGGTGCAACAGCGGCCTGGTACAATGCCACTCAGTGCCTGTCCGAA
Seq A exon
GTTGCAGCGAACCAAGATGCTTCAATGGGGGGACGTGTCAGCAGGCCCTGTATTTCTCTGACTTTGTCTGCCAGTGCCCTGATGGATTTGTAGGGAAACGCTGTGACATAG
Seq C2 exon
ATACCAGAGCAACATGCTTTGAGGAGCAGGGCATCACCTACAGAGGCACGTGGAGCACAGCAGAAAGTGGGGCTGAGTGCATCAACTGGAATAGCAGTGTTCTGTCGCTGAAGCCCTACAATGCAAGGAGGCCAAATGCCATCAAGCTGGGCCTTGGGAATCACAATTACTGCAGGTAAAAAGTGCTTTCCACAGGAGGAGAGTCTCAGGTGAGAAGTATTACATTCAGGGAAGGCCTGGCCAATCAGCCACGTATTCTAGATAGACAGGTAGATGGATAGCTAGTTATGTAGCTATGTATATGTATATATGTGGGCATACATATATAGATGGGTAGAGAAAGGATAGATACATACACACATGAATACATACATACATACATACATACATATATACATAGGTAGATCAATGCATTCATATATTGATGATTGATATATTGACACATAAATGGTAGACAGAGGTTGACTTGAAGGCATCAATTCATATCTCTGTGTGGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031538-'12-9,'12-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=WD(100=80.9)
A:
PF0000822=EGF=WD(100=86.8)
C2:
PF0005113=Kringle=PU(64.6=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCAGAGATGAGCCAAC
R:
GTAGGGCTTCAGCGACAGAAC
Band lengths:
256-367
Functional annotations
There are 1 annotated functions for this event
PMID: 1900431
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: de novo protein sequencing by mass spectrometry. ELM ID: ELMI000225; ELM sequence: CFNGGTC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types