BtaEX6107205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001244 | PLAT
Description
Bos taurus plasminogen activator, tissue (PLAT), mRNA. [Source:RefSeq mRNA;Acc:NM_174146]
Coordinates
chr27:36745703-36747201:-
Coord C1 exon
chr27:36747091-36747201
Coord A exon
chr27:36746649-36746823
Coord C2 exon
chr27:36745703-36745794
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCCACTTCCCATCAGATG
3' ss Score
8.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTGCAGTGAACCTTGGTGTTTCAATGGGGGGACATGTCGGCAGGCCCTCTATTCTTCAGACTTTGTCTGCCAGTGCCCAGAAGGGTTCATGGGGAAGCTCTGTGAAATAG
Seq A exon
ATGCTACCGCCACGTGCTATAAGGACCAGGGTGTCGCCTACAGAGGCACGTGGAGCACGGCAGAGAGCGGGGCTGAGTGCGCCAATTGGAACAGCAGCGGCCTGGCCATGAAGCCGTACAGCGGGCGCAGGCCCAACGCCATCAGGCTGGGCCTTGGGAACCACAACTACTGCAG
Seq C2 exon
AAACCCGGACCAAGACTCAAAGCCCTGGTGCTACGTCTTCAAGGCAGGGAAATACATCTCTGAGTTCTGCAGCACTCCAGCCTGCGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001244-'10-5,'10-4,11-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.8)
A:
PF0005113=Kringle=PU(64.6=89.8)
C2:
PF0005113=Kringle=PD(34.1=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCAGTGAACCTTGGTGTT
R:
GTGCTGCAGAACTCAGAGATGT
Band lengths:
186-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]