GgaEX6024776 @ galGal3
Exon Skipping
Gene
ENSGALG00000003709 | E1C209_CHICK
Description
NA
Coordinates
chr22:2764059-2765903:-
Coord C1 exon
chr22:2765790-2765903
Coord A exon
chr22:2764715-2764889
Coord C2 exon
chr22:2764059-2764150
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCCCTTTTGCTCAGATA
3' ss Score
7.85
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTGCACTAGAAATAAATGCTACAATGGGGGCCAGTGTTCACAGGCATATTACTCCCCACAGCTCTTCATCTGCCGCTGTCACCACGGTTTCTCTGGGAAGCAGTGTGAAATAG
Seq A exon
ATACTGAAGTTAAGTGCTACAAAAATGCTGGAGTAACATACAGGGGTACATGGAGCATAACAGAGAGTGGAGCTGAATGCCTGAATTGGAATATCAATGGCTTGATGGACCATAAATACAGTGGCCAAAGAAAGGATGCTGCTGAGCTGGGATTGGGCAATCACAACTATTGCAG
Seq C2 exon
AAACCCAGATGAGGACTCCAGACCTTGGTGCTATGTCTACAAAGGGGGGAAGTACACCTGGGAATACTGCAGTGTGCCCCCCTGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003709-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=87.2)
A:
PF0005113=Kringle=PU(64.6=89.8)
C2:
PF0005113=Kringle=PD(34.1=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGAAATAAATGCTACAATGGGGG
R:
GCACACTGCAGTATTCCCAGG
Band lengths:
186-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]