MmuEX6034860 @ mm9
Exon Skipping
Gene
ENSMUSG00000031538 | Plat
Description
plasminogen activator, tissue [Source:MGI Symbol;Acc:MGI:97610]
Coordinates
chr8:23882678-23884180:+
Coord C1 exon
chr8:23882678-23882788
Coord A exon
chr8:23883108-23883282
Coord C2 exon
chr8:23884089-23884180
Length
175 bp
Sequences
Splice sites
3' ss Seq
GATGTCCTTCTGTCAATCAGATA
3' ss Score
6.72
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTGCAGCGAACCAAGATGCTTCAATGGGGGGACGTGTCAGCAGGCCCTGTATTTCTCTGACTTTGTCTGCCAGTGCCCTGATGGATTTGTAGGGAAACGCTGTGACATAG
Seq A exon
ATACCAGAGCAACATGCTTTGAGGAGCAGGGCATCACCTACAGAGGCACGTGGAGCACAGCAGAAAGTGGGGCTGAGTGCATCAACTGGAATAGCAGTGTTCTGTCGCTGAAGCCCTACAATGCAAGGAGGCCAAATGCCATCAAGCTGGGCCTTGGGAATCACAATTACTGCAG
Seq C2 exon
AAACCCAGACCGAGACTTGAAGCCCTGGTGCTATGTCTTTAAGGCAGGGAAGTATACCACGGAGTTCTGTAGCACACCAGCTTGCCCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031538-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.8)
A:
PF0005113=Kringle=PU(64.6=89.8)
C2:
PF0005113=Kringle=PD(34.1=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCAGCGAACCAAGATG
R:
CCTTAGGGCAAGCTGGTGTG
Band lengths:
203-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: