DreEX0055997 @ danRer10
Exon Skipping
Gene
ENSDARG00000062707 | plat
Description
plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
Coordinates
chr8:2219591-2225175:-
Coord C1 exon
chr8:2225065-2225175
Coord A exon
chr8:2220198-2220372
Coord C2 exon
chr8:2219591-2219682
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGAGTCTGTGCTTCTGTTAGATA
3' ss Score
4.22
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
AATGCTTCGTGTCTAAGTGTTATAATGGAGGGACGTGTAAAGAAGCGCTTTACTCCAGTGACTTCATCTGCCAGTGTCCGCCCGGCTTTACAGGCACACAGTGTGAAATCA
Seq A exon
ATACTCTTGAGAGATGCTCCAGAGGTCAGGGGTTGGGATATCGAGGCTCGTGGAGCGTCAGTTCGTCAGGAATGGAGTGTATTAACTGGAACTCCAGCTCTCTGCGAGGGAAGAAGTTCACTGCGAGGAGACCAGAGGCGAGCACACTGGGTCTGGGGAACCACAACTACTGCAG
Seq C2 exon
GAATCCAGACGGAGACTCTAAACCTTGGTGTTATGTATATAAAAAGGCTCAGATCTCATGGGAGTTTTGCTCTTTACCGACATGTGTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062707_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.8)
A:
PF0005113=Kringle=PU(64.6=89.8)
C2:
PF0005113=Kringle=PD(34.1=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTCGTGTCTAAGTGTTATAATG
R:
CTATTACACATGTCGGTAAAGAGCA
Band lengths:
202-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]