GgaEX6024776 @ galGal4
Exon Skipping
Gene
ENSGALG00000003709 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:HGNC:9051]
Coordinates
chr22:2713396-2715240:-
Coord C1 exon
chr22:2715127-2715240
Coord A exon
chr22:2714052-2714226
Coord C2 exon
chr22:2713396-2713487
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCCCTTTTGCTCAGATA
3' ss Score
7.85
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTGCACTAGAAATAAATGCTACAATGGGGGCCAGTGTTCACAGGCATATTACTCCCCACAGCTCTTCATCTGCCGCTGTCACCACGGTTTCTCTGGGAAGCAGTGTGAAATAG
Seq A exon
ATACTGAAGTTAAGTGCTACAAAAATGCTGGAGTAACATACAGGGGTACATGGAGCATAACAGAGAGTGGAGCTGAATGCCTGAATTGGAATATCAATGGCTTGATGGACCATAAATACAGTGGCCAAAGAAAGGATGCTGCTGAGCTGGGATTGGGCAATCACAACTATTGCAG
Seq C2 exon
AAACCCAGATGAGGACTCCAGACCTTGGTGCTATGTCTACAAAGGGGGGAAGTACACCTGGGAATACTGCAGTGTGCCCCCCTGTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003709-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=87.2)
A:
PF0005113=Kringle=PU(64.6=89.8)
C2:
PF0005113=Kringle=PD(34.1=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGAAATAAATGCTACAATGGGGG
R:
GCACACTGCAGTATTCCCAGG
Band lengths:
186-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]