BtaEX6107209 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001244 | PLAT
Description
Bos taurus plasminogen activator, tissue (PLAT), mRNA. [Source:RefSeq mRNA;Acc:NM_174146]
Coordinates
chr27:36742912-36743820:-
Coord C1 exon
chr27:36743735-36743820
Coord A exon
chr27:36743091-36743286
Coord C2 exon
chr27:36742912-36742996
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCTCCCCTCCGCAGTCA
3' ss Score
11.29
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAATCCCGATGGGGACGCCCAGCCTTGGTGCCACGTGTGGAAGGACCGCCAGCTGACCTGGGAGTACTGTGATGTGCCCCAGTGCG
Seq A exon
TCACCTGTGGCCTGAGACAGTACAAGCGGCCCCAGTTCCGCATCAAAGGAGGCCTCTTCGCGGACATCACCTCCCACCCCTGGCAGGCCGCGATCTTCGTCAAGAACAGGCGGTCCCCGGGAGAGCGGTTTCTGTGTGGGGGGATCCTGATCAGCTCCTGCTGGGTGCTGTCGGCCGCCCACTGCTTCCAGGAGAG
Seq C2 exon
GTACCCGCCTCACCATCTCAAGGTGTTCCTGGGCAGGACGTACCGGCTGGTCCCTGGAGAGGAGGAGCAGACGTTTGAAGTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001244-'14-11,'14-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=93.3)
A:
PF0008921=Trypsin=PU(20.7=77.3)
C2:
PF0008921=Trypsin=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTGGTGCCACGTG
R:
ACTTCAAACGTCTGCTCCTCC
Band lengths:
148-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]