DreEX6047913 @ danRer10
Exon Skipping
Gene
ENSDARG00000062707 | plat
Description
plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
Coordinates
chr8:2207184-2209557:-
Coord C1 exon
chr8:2209495-2209557
Coord A exon
chr8:2208526-2208730
Coord C2 exon
chr8:2207184-2207320
Length
205 bp
Sequences
Splice sites
3' ss Seq
CCTCCGTGTGTGTCTGTCAGGTG
3' ss Score
10.83
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CGAGGAAACTTCCATCAATCACCACACTTGGACCACGAGCCCCTGCAACCACTAACAATCAAG
Seq A exon
GTGTGTGTGGTCAGCGTGAGTCTCCGTCTAACCTGCTGCCGATGTTCAGGATTCGTGGTGGTCAGGCCAGTGACATCAGAGAGCAGCCGTGGCAGGCGGCCATCACCGTTTACCTGCCGCGCTCAAAAACACACAACTTCCTGTGCGGTGGCGTCCTCATTGACTCCTGCTGGATCCTCTCAGCCGCTCACTGCTTCCAGCAGAG
Seq C2 exon
ATACGAGGAGAGTCGTTTGCGGGTGGTTTTGGGTCGAACCTTCAGGCTCCAGAACTCCAGCAGTGAGCAGATCTTTGACGTGGAGAAATACTGGATTCATGAGCAGTATGACGACGAGACCTACGACAACGATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062707-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.2=73.9)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTTCCATCAATCACCACACT
R:
CGATATCGTTGTCGTAGGTCTCG
Band lengths:
196-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]