RnoEX6055959 @ rn6
Exon Skipping
Gene
ENSRNOG00000019018 | Plat
Description
plasminogen activator, tissue type [Source:RGD Symbol;Acc:3342]
Coordinates
chr16:74104025-74105721:-
Coord C1 exon
chr16:74105636-74105721
Coord A exon
chr16:74104271-74104466
Coord C2 exon
chr16:74104025-74104161
Length
196 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCCTCTCCAGCCA
3' ss Score
10.43
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GAACCCAGATGGGGATGCCAAACCTTGGTGCCACGTGATGAAGGACCGAAAGCTGACATGGGAATATTGCGACATGTCCCCATGCT
Seq A exon
CCACCTGCGGCCTGAGGCAATACAAACAGCCTCAGTTTCGAATTAAAGGAGGACTCTTCACAGACATCACCTCACACCCTTGGCAGGCCGCCATCTTTGTCAAGAACAAGAGGTCTCCAGGAGAGAGATTCCTGTGTGGAGGGGTGCTGATCAGTTCCTGCTGGGTGCTATCTGCCGCCCACTGCTTTGTAGAGAG
Seq C2 exon
GTTTCCACCCCATCATCTTAAAGTGGTCTTGGGCAGAACATACAGAGTGGTCCCTGGAGAGGAGGAGCAGACATTCGAGATCGAAAAGTACATAGTCCATAAGGAATTTGATGACGACACTTATGACAATGACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019018-'21-19,'21-17,24-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=93.3)
A:
PF0008921=Trypsin=PU(20.8=77.3)
C2:
PF0008921=Trypsin=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGGGATGCCAAACCTT
R:
CGATGTCATTGTCATAAGTGTCGT
Band lengths:
218-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]