MmuEX6034857 @ mm10
Exon Skipping
Gene
ENSMUSG00000031538 | Plat
Description
plasminogen activator, tissue [Source:MGI Symbol;Acc:MGI:97610]
Coordinates
chr8:22776791-22778549:+
Coord C1 exon
chr8:22776791-22776876
Coord A exon
chr8:22778103-22778298
Coord C2 exon
chr8:22778413-22778549
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCCTTTCTTCCCCAGCCA
3' ss Score
10.1
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GAATCCAGATGGTGATGCCAGACCTTGGTGCCATGTGATGAAGGACCGAAAGCTGACGTGGGAATACTGTGACATGTCCCCATGCT
Seq A exon
CCACCTGTGGCCTGAGGCAGTACAAACGGCCTCAGTTTAGAATTAAAGGAGGACTCTACACAGACATCACCTCACACCCTTGGCAGGCTGCCATCTTTGTCAAGAACAAGAGGTCTCCTGGAGAGAGATTCCTTTGTGGAGGGGTGCTGATCAGTTCCTGCTGGGTGCTGTCAGCTGCCCACTGCTTTCTAGAGAG
Seq C2 exon
GTTCCCCCCCAATCATCTTAAAGTGGTCTTGGGCAGAACATACAGGGTGGTCCCCGGAGAGGAAGAACAGACATTTGAGATTGAAAAATACATAGTCCATGAGGAATTTGATGACGATACTTATGACAACGACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031538-'18-15,'18-13,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=93.3)
A:
PF0008921=Trypsin=PU(20.8=77.3)
C2:
PF0008921=Trypsin=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTTGGTGCCATGTGATG
R:
CGATGTCGTTGTCATAAGTATCGT
Band lengths:
204-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types