BtaEX6107257 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014056 | CHRNA6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MQ06]
Coordinates
chr27:37200627-37209034:-
Coord C1 exon
chr27:37208956-37209034
Coord A exon
chr27:37206468-37206607
Coord C2 exon
chr27:37200627-37200671
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGTTTGGCCCAAAGGCT
3' ss Score
7.18
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
ATGCTGCCCCGCGGGGGTCAGGGAGCCCTTCGCTTTGCGCTGTGTGTCTGGTGGTGTGTATTTGCTCTGTGCTTTAAAG
Seq A exon
GCTGTGCCGGCTGTGCATCGGAGGAGAGGCTCTTTCACAAGCTGTTCGCTCATTATAACCAGTTCATCAGGCCCGTGGAGAACGTTTCCGACCCGATCACCGTGTATTTTGAAGTGGCCATCACACAGCTGGCTGATGTG
Seq C2 exon
GATGAAGTAAACCAGATCATGGAAACCAACCTGTGGCTACGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014056-'1-1,'1-0,2-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAGGGAGCCCTTCG
R:
GTGACGTAGCCACAGGTTG
Band lengths:
110-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]