MmuEX6035194 @ mm9
Exon Skipping
Gene
ENSMUSG00000031491 | Chrna6
Description
cholinergic receptor, nicotinic, alpha polypeptide 6 [Source:MGI Symbol;Acc:MGI:106213]
Coordinates
chr8:28518787-28524416:-
Coord C1 exon
chr8:28524096-28524416
Coord A exon
chr8:28522198-28522337
Coord C2 exon
chr8:28518787-28518896
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTCCGGCCACGCAGGCA
3' ss Score
6.93
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GACAGGACATGTGACAGCCAGCCGAGTGAAGCAGCAGGGTTGGCTTCCCTTGCCCTTCACATCTGTTTCAGCCTGGGATGCAGGGAGCAGTTGCATGATGTCCCGTGTTTTCACTTCACAGAAGATCTGTGTGAGCTTCCAGGAGCTTCCCGGGGCTTTCAATATCTGATTCTGGCAGCTGACAGACAGCTGTGTCTTCCACAGCCCTCCGTGTAGAAATCGGAATTCAGAGAGCTTTTATCATGCTGAACAGCCGGGACCAGGGAAACCTGCACTCCGGTTTATGTCTGTGGCTATGTGGATTCCTGGCTCTCTTTAAAG
Seq A exon
GCAGTACAGGCTGTGAATCTGAAGAGCAGCTCTTCCACAGGCTGTTTGCTCACTACAACCGCTTCATCCGGCCGGTGGAGAATGTCTCCGATCCCGTCACGGTGCATTTTGAATTGGCAATCACGCAACTGGCCAATGTG
Seq C2 exon
ATCTGGAAGGACTACAGATTGCGTTGGGATCCAACGGAGTATGATGGCATCGAGACACTTCGAGTTCCAGCAGACAACATCTGGAAGCCTGACATCGTTCTGTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031491-'0-2,'0-0,1-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCGGGGCTTTCAATAT
R:
GCTGGAACTCGAAGTGTCTCG
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: