GgaEX6050566 @ galGal3
Exon Skipping
Gene
ENSGALG00000015382 | F1NKI5_CHICK
Description
NA
Coordinates
chrZ:52486214-52490286:+
Coord C1 exon
chrZ:52486214-52486471
Coord A exon
chrZ:52487953-52488092
Coord C2 exon
chrZ:52490242-52490286
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTTATCTTTACCAATGCAGACA
3' ss Score
6.32
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAAGCAACTCTGCCAGGCTTTGCTATGCTTAGCAGACTGCAGAGTTTGCTGCAAATGCAAAACTGAAGTCCATCTTTGCACCTCTTACTTACCAAGGGGCTTCAGTGTCTTCTTGCTTGCAGTTCCTGGCTTTCCTCAAACCTCTCTTCTCGAAAGGAAGGTCTGTTCTGTTTCTGGCGATGCATCCCAAGAGGCGGCTCTGTTGGTGTCTCCCTGCTTCTGGTGCATGGGCATTCATGCTCACATCCTTAATTGCAG
Seq A exon
ACACCACAGCCTGCGAGTCAGAGGAACGGCTGTTTCACAAACTCTTCTCCCGCTACAACCAGTTCATCAGGCCGGTGGAAAACGTATCTGATCCTGTCACGGTGCATTTCGAACTGGCCATTACCCAGCTTACAAATGTG
Seq C2 exon
GATGAAGTCAATCAGATTATGGAAACCAATTTGTGGCTAAGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015382-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=92.9)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGCAAAACTGAAGTCCA
R:
CCACAAATTGGTTTCCATAATCTGA
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]