RnoEX0021208 @ rn6
Exon Skipping
Gene
ENSRNOG00000012283 | Chrna6
Description
cholinergic receptor nicotinic alpha 6 subunit [Source:RGD Symbol;Acc:69281]
Coordinates
chr16:68860018-68863267:+
Coord C1 exon
chr16:68860018-68860274
Coord A exon
chr16:68862027-68862166
Coord C2 exon
chr16:68863223-68863267
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTCTGGCTACGCAGGCA
3' ss Score
6.98
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CTGCTTCAGCCCAGGACGCAGGGAGCAACCGTGTGGTAGCCCGTGTTTTCACTTCACAGAAGATCCGTGTGGACTTCAGGAGCTTCCCGAGGCTTTCGTGGTCTGATTCTTGCAGCTGACTGACAGCTTCGGTTTCCACAGCCCTCTGTGTCGGGATCAGAATTCATGTGCTTTTATCATGCTGAACTGCTGGGGTCGGGGAGACCTTCGCTCCGGTTTGTGTCTGTGGATATGTGGATTCTTGGCTTTCTTTAAAG
Seq A exon
GCAGTAGAGGCTGTGTGTCTGAGGAACAGCTCTTCCACACACTCTTCGCCCACTACAACCGCTTCATCCGGCCAGTGGAAAACGTTTCTGATCCCGTCACGGTGCACTTTGAGTTGGCCATCACGCAGCTGGCCAATGTG
Seq C2 exon
GATGAAGTCAACCAGATTATGGAGACCAATCTGTGGCTGCGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012283-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTAGCCCGTGTTTTCAC
R:
TGGTCTCCATAATCTGGTTGACT
Band lengths:
254-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]