BtaEX6107470 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:508488-511059:+
Coord C1 exon
chr25:508488-508602
Coord A exon
chr25:509884-509945
Coord C2 exon
chr25:510643-511059
Length
62 bp
Sequences
Splice sites
3' ss Seq
GGGCCTCACTCTCCTCACAGCCG
3' ss Score
8.93
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTCCGGCTCCTAGTGGTCACCGTGCAGGGCCTGGTCCATCTGCTCGTGGACCTCATCAACTCGCTGCCGCTGTACTCGCTTGGCCTCCGGCTGTGCCGGCCCTACAGGCTTGCGG
Seq A exon
CCGGCGTGAAGTTCCGGGTCCTGGAGCACGAGGCTGGCCGGCCCCTGCGCCTCCTGATGCAG
Seq C2 exon
ATAAACCCTCTGCCCTTCAGCCACGTGGTGCGCACCTACCGCCTCCCCAGCTGTGGCTGCCACCCCAAGCACTCCTGGGGTTCCCTGTGCCGCAAGCTGTTCTTCGGGGAGCTCATCTACCCCTGGAGGCAGAGAGGGGACAAGCAGGACTGAGGGCCCGGCCCCCGGCCCGCCTTGCACCGCCATCTGCCAGGTGTCAGGGCGGCACACACCTCTTGCTACCCCTGGTTGTCGGGGCCTCTGCAGGCCCCACCCGTCGCATCTCCACCCGACTCCGGTCCTGGGGGTGGTGAGGAGGGGGACGCGCGCAGTCAGCCAAGCCAGCACCCAGCTTCAGCACCATCAGCTCTGCCTCGGGGCCCCCTGCTGACCTGTTGTGACGGCACGGTTCACCTTGTCCCACCGGCCCCTGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594-'21-18,'21-17,23-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.512 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCTCATCAACTCGCTG
R:
GAGTGCTTGGGGTGGCAG
Band lengths:
144-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]