GgaEX6013145 @ galGal4
Exon Skipping
Gene
ENSGALG00000001985 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr14:13517539-13526446:+
Coord C1 exon
chr14:13517539-13517653
Coord A exon
chr14:13521668-13521729
Coord C2 exon
chr14:13525833-13526446
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTGTTTCTTTTCAGCTG
3' ss Score
12.39
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCCGTTTGCTGGTGGTGATTGTGCAAGGCCTGATCCACTTGCTGGTTGACCTGATTGACTCTCTGCCCCTTTATTCAATCATCCTTCGGTTCTGCAGATCCTACAGGCTGGCAG
Seq A exon
CTGGTGTGAAGTTCAGAGTCCTCGAGCAGCAGGATGGAAAACCTCTTCGACTCCTTATGCAG
Seq C2 exon
ATCAACCCTCTGTCCTATGGCAGTGTGGTGCAGACATACAGGCTGCCGACCTACAGCTGTTACCCTAAGGATTCCTGGACGTCCCTGTGCAAGAAGCTGTTCCTTGGAGAGCTGATCTACCCTTGGAAACACAAAGGAGAGAAACAGGACTGAAAAAAAAAAAAAAAAGCAGAAGAGCCAGGAGGGAAAGACTTGGTTAGAAAAGCTTATTGACTCCTAATGCTTTTGGACCAAAGGTATCTCAGAGCCAGCAGCTGCTGGATCCTTTTAATGACAGTTTGGTAATGTGGGAGGGGCTGAATTTTTAAAGGCAAATGTTTTTAAATATTATTTGTCAACTTCCCATTTCCCCTACAGTGTGTTTGAGCTGGTTTGGTTTCCAGGCTGTTTCTTGTTCATGCAGCGTTCGTCCTACCCTGCCTGCTGTCTGCCTGCTGGCACCAGGGGCTAATGATTCTTCTTGGAGCAAAAGGTTAAACCTTTTTACCACCAGTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985-'17-25,'17-18,20-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGTGCAAGGCCTGATCCA
R:
TGTATGTCTGCACCACACTGC
Band lengths:
138-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]