MmuEX6076128 @ mm10
Exon Skipping
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25926421-25930635:-
Coord C1 exon
chr17:25930521-25930635
Coord A exon
chr17:25928791-25928852
Coord C2 exon
chr17:25926421-25927756
Length
62 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTGCTTTCCTATAGCTG
3' ss Score
9.47
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCGGCTCCTGGTGATCACTGTGCAAGGCTTAATCCATCTACTTGTAGACCTCATCAATTCCCTGCCACTATACTCCCTTGGCCTTCGACTCTGCCGACCCTACAGGCTGGCAG
Seq A exon
CTGGTGTGAAGTTCAGAGTTCTGGAAAAGGAGGCAGGCAGACCCCTCCGCCTCCTGATGCAG
Seq C2 exon
ATAAACCCCCTGTCCTATAACCATGTGATGCACATCTACCGTCTGCCTCGCTGTGGCTGCCATCCCAAGCACTCCTGGGGTACCCTGTGCCGAAAGCTGGTCTTCGGAGAGCTCATCTACCCCTGGAGGCAGAGAGAGGACAAACAGGACTGAGGAGCTGGACACAGCCTACCCATAGCTACTGCACAACCATCACGCCTCCTCTCTGCCAGGACAGCACTGACCACGGGGTCATCTCAGGTCCCACAAGGGCCAACCAAACACTCTGTGTGCTGAATGTAGGCAGGCCTTACCCTTGAGTTACTACTTTGCTCTCGGACCCTGCCAGCTTCAGTCCTGCACTCTATCTAGCACAGTGGTTCTCAACCGTCCCAAAGCTGACCCTTTAATACAGTTCCTCATGTTGTGGTGACCCCAACCATAAAATTATATTCATTACTACTTCATTACTGTTAATTTTGCTACTGCTATGAATCATGATATAATATAAATATCTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-'40-47,'40-45,43-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.084 C2=0.013
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(36.7=46.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCCTTGGCCTTCGACTC
R:
GAAGACCAGCTTTCGGCACAG
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types