DreEX0055481 @ danRer10
Exon Skipping
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26661675-26664558:-
Coord C1 exon
chr3:26664444-26664558
Coord A exon
chr3:26662856-26662917
Coord C2 exon
chr3:26661675-26662610
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATTATGTCTTCGTATTCCAGAGG
3' ss Score
7.18
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTGCGGCTGGTGGTGGTTCTGTTTCAGGGAGTGATTCACCTCAGTGTCGACTTCATCAACTCTTTCCCCCTGTTTGCCATCGGCCTGCGCATCTGCAGACCATACAGACTGGCAG
Seq A exon
AGGGTGTTAAATTCAAAGTGCTTTGTGAGGAGTCAGGATCTCCGCTTCACCTGATGATGGAG
Seq C2 exon
ATCAACCCATTGAAGTGCAGCTCTGTACTACAGCGCTACCGGACGCCCACCTATAGCTGTTACCCTAAGGATTCATGGGCCGCATTGTGCAAGAAACTATTTGTAGGAGAACTTATTTACCCCTGGAAGCAGAAGACTGACAAGACAGACTAACTTTGAGGTACCATGCCTGTTCAATTCTGGTTCTGGAGTTTAGCTCAAACTTATGCCAACACAGCTGCCTTTTTTGTTTGGGGTTGGAGCTAAACTCTTTCAGGAATGGACAACACTATACTAGACTAACATAACCAGACATGTGCACACTGGGGAAAACATGCTCTGTTCGTCAAACTTCACTCACTTCCAAAATAGTCTTAATAGTTTTTCTTTTATAAAAATACAGATTATGTTAAATGAAATAATTAGATAAACATTGAATCACTATTTCTGTGATTGAAACTGTGATTATTTTTGTATTTATTTTAAGTCTATTTCTACTTTTGTATAACATTTGAAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGGTGGTTCTGTTTCA
R:
CAGAGCTGCACTTCAATGGGT
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]