RnoEX0065870 @ rn6
Exon Skipping
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15289536-15293346:-
Coord C1 exon
chr10:15293232-15293346
Coord A exon
chr10:15291708-15291769
Coord C2 exon
chr10:15289536-15290897
Length
62 bp
Sequences
Splice sites
3' ss Seq
AATACCTTGCTTTCCTATAGCTG
3' ss Score
8.48
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCGGCTCCTGGTGATCACTGTGCAGGGCTTAATCCATCTACTTGTAGACCTCATCAATTCCCTCCCACTGTACTCCCTTGGCCTTCGACTCTGCCGACCCTACAGGCTGGCAG
Seq A exon
CTGGTGTGAAGTTCAGAGTTCTGGAAAAGGAGGCAGGCAGGCCCCTCCGCCTCCTGATGCAG
Seq C2 exon
ATAAACCCTCTGCCCTATAGCCATGTTGTGCACACCTACCGTCTGCCTAGCTGTGGCTGCCATCCCAAGCACTCCTGGGGTACTCTGTGCCGAAAGCTGTTCTTCGGAGAGCTCATCTACCCCTGGAGGCAGAGAGAGGACAAACAGGACTGAGGAGCTGGACACAGCCTGCTCATAGCTACTGCAGCCATCTCACCTCCTCTGCCAAGATAGCACTGACCATGGGGGTCATCTCAGGCCCCACATGGGCCAACCAAACTCTGCTAAATGTAGGCAGGCCTTACCCTGCCAGCTTCACTCCTGCACTCTGGCTAGCACAGTGGTTCTCAACCTTCCTAATGTTGTGACCCTTTAATATAGTTCATGTTGTGGTGACCCTAACCATAAAATTATTTTCATTACTACTTCATAACTAATTTTGCTACTGTTATGAATTGTGATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140-'25-21,'25-19,27-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCCTTGGCCTTCGACTC
R:
AGAACAGCTTTCGGCACAGAG
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]