BtaEX6108082 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020582 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr25:2180293-2182702:+
Coord C1 exon
chr25:2180293-2180464
Coord A exon
chr25:2180911-2181188
Coord C2 exon
chr25:2182545-2182702
Length
278 bp
Sequences
Splice sites
3' ss Seq
CCCAACCCTCTTCCTTTTAGTAA
3' ss Score
7.14
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
GCCCCCCAGCCTGCGGGAAGCGCCTGCAGCTGAACCGGATCGTGGGAGGCGAGGACAGCTCGGACGCCGAGTGGCCCTGGGTTGTGAGCATCCGGAAGAACGGCACCCACCACTGCGCGGGCTCCCTGCTCACCAGCCGCTGGGTGCTCACGGCCGCCCACTGCTTCAAGGA
Seq A exon
TAATCTGGACAAACCAACCCAGTTCTCTGTGCTGCTGGGAGCCTGGCAGCTGGGGAACCCTGGCCCAAGGTCCCAGGAGGTGGGTATCGCCTGGGCACAGCCCCACCCTGTGTACTCCTGGAAGGAGGGCTCCCGCGCTGACATCGCCCTGGTGCGCCTGGAGCGCGCCATCCAGTTCTCTGAGCGCGTCCTGCCCATCTGCCTGCCCGACTCCACCGTCCAGCTCTCTCCGGACACCAACTGCTGGATTGCCGGCTGGGGGAGCGTCCACGATGGAG
Seq C2 exon
TGCCCCTGTCCCACCCTCAGACCCTCCAGAAGCTGAAGGTCCCCATCATCGACTCAGCCACCTGCAGCCGCCTGTACTGGCGGGGAGCCGGGCAGGGCGCCATCACCGAGGACATGCTGTGTGCTGGCTACCTGGAGGGGGAGCGCGACGCCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020582-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=75.9)
A:
PF0008921=Trypsin=FE(39.4=100)
C2:
PF0008921=Trypsin=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGCCTGCAGCTGAA
R:
CTCCAGGTAGCCAGCACACAG
Band lengths:
293-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]