RnoEX6046343 @ rn6
Exon Skipping
Gene
ENSRNOG00000039698 | Prss22
Description
serine protease 22 [Source:RGD Symbol;Acc:1310880]
Coordinates
chr10:13371101-13373517:-
Coord C1 exon
chr10:13373346-13373517
Coord A exon
chr10:13372922-13373199
Coord C2 exon
chr10:13371101-13371258
Length
278 bp
Sequences
Splice sites
3' ss Seq
CTCGTTCTTTCTCCTTCCAGCAA
3' ss Score
10.55
5' ss Seq
GAGGTGCAC
5' ss Score
2.13
Exon sequences
Seq C1 exon
GGTCGCCAGATTGTGGGAAGCCGCAGCAGCTGAACAGGGTCGTGGGAGGTGAGGACAGCGCGGATGCCCAGTGGCCTTGGATCGTTAGTATCCTCAAGAACGGCTCCCACCACTGCGCAGGCTCCTTGCTCACCAACCGCTGGGTGGTCTCAGCCGCACACTGCTTTAGCAG
Seq A exon
CAATATGGACAAACCATCTCCGTACTCAGTATTGTTGGGGGCCTGGAAGCTAGGGAACCCAGGCCCAAGGTCTCAGAAAGTAGGCATTGCTTCGGTGCTGCCCCACCCCAGGTATTCTCGGAAGGAGGGGACCCATGCAGACATTGCCCTGGTGCGCCTGGAACGCCCCATCCAATTCTCTGAGCGGATCCTGCCCATCTGCCTACCTGACTCCTCTGTCCATCTCCCTCCCAACACCAACTGCTGGATTGCCGGCTGGGGAAGCATCCAGGATGGAG
Seq C2 exon
TGCCCCTGCCCCGCCCTCAGACCCTTCAGAAGCTGAAGGTGCCCATCATCGACCCTGAACTCTGCAAAAGTTTGTACTGGCGGGGAGCTGGTCAGGAAGCCATCACCGAGGACATGCTGTGTGCTGGTTACCTGGAAGGGAAGCGGGACGCTTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039698-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=75.9)
A:
PF0008921=Trypsin=FE(39.4=100)
C2:
PF0008921=Trypsin=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTGTGGGAAGCCGCAG
R:
TTCCCTTCCAGGTAACCAGCA
Band lengths:
308-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]