MmuEX6075564 @ mm10
Exon Skipping
Gene
ENSMUSG00000045027 | Prss22
Description
protease, serine 22 [Source:MGI Symbol;Acc:MGI:1918085]
Coordinates
chr17:23994599-23996837:-
Coord C1 exon
chr17:23996666-23996837
Coord A exon
chr17:23996242-23996519
Coord C2 exon
chr17:23994599-23994756
Length
278 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTCTCTCCTTCCAGCAA
3' ss Score
11.57
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
TGTCCCCAGACTGTGGGAAGCCTCAGCAGCTGAACCGGATTGTGGGAGGTGAGGACAGCATGGATGCCCAGTGGCCCTGGATTGTTAGCATCCTCAAGAATGGCTCCCACCACTGTGCAGGCTCCCTGCTCACCAACCGCTGGGTGGTCACAGCCGCGCACTGCTTTAAGAG
Seq A exon
CAATATGGACAAACCATCTCTGTTCTCAGTATTGTTGGGGGCCTGGAAGCTGGGGAGCCCAGGCCCAAGGTCCCAGAAAGTAGGCATTGCTTGGGTGCTGCCTCACCCCAGGTATTCTTGGAAGGAGGGAACCCATGCAGACATTGCCCTGGTGCGCCTGGAACACTCCATCCAGTTCTCTGAGCGGATCCTGCCCATCTGCCTACCTGACTCCTCTGTCCGTCTCCCTCCCAAGACCGACTGCTGGATTGCCGGCTGGGGAAGCATCCAGGATGGAG
Seq C2 exon
TGCCCCTGCCCCACCCTCAGACCCTTCAGAAGCTGAAGGTGCCCATCATCGACTCCGAACTCTGCAAAAGCTTGTACTGGCGGGGAGCCGGTCAGGAAGCCATCACCGAGGGCATGCTGTGTGCTGGTTACCTGGAAGGGGAGCGGGATGCTTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045027-'3-5,'3-2,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=75.9)
A:
PF0008921=Trypsin=FE(39.4=100)
C2:
PF0008921=Trypsin=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTCAGCAGCTGAACC
R:
CCTTCCAGGTAACCAGCACAC
Band lengths:
295-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types