BtaEX6108236 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3084189-3086877:-
Coord C1 exon
chr25:3086706-3086877
Coord A exon
chr25:3086387-3086431
Coord C2 exon
chr25:3084189-3084313
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTGCCATTGTAGATG
3' ss Score
9.42
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GATGAATACTATCACTTACTAGCAGAGAAAATCTACAAGATTCAAAAAGAGCTAGAAGAAAAGCGGAGGTCGCGTTTACACAAACAAGGCATCTTGGGTAACCAGCCAGCCTTATCAGCCCCCGGGACGCAGCCCCCTGGAATACCCCAGGCGCAGCCTGTGAGACCTCCAA
Seq A exon
ATGGGCCCATGCCTCTTACAGTGAATCGTATGCAGGTTTCTCAAG
Seq C2 exon
GGATGAATTCATTTAACCCAATATCCTTGGGGAACGTACAGTTGCCACAAGCGCCCATGGGACCGCGTGCGGCATCCCCCATGAACCACTCTGTCCCGATGAACAGCATGGGCTCCGTTCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=0.938 C2=0.976
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTTTACACAAACAAGGCA
R:
GCAACTGTACGTTCCCCAAGG
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]