GgaEX6012972 @ galGal3
Exon Skipping
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13229948-13231613:-
Coord C1 exon
chr14:13231421-13231613
Coord A exon
chr14:13231194-13231247
Coord C2 exon
chr14:13229948-13230072
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTATCTGTTTTTGTTGCAGATG
3' ss Score
12.62
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
GATGAATACTATCACTTATTAGCAGAAAAAATCTATAAGATACAAAAGGAGCTAGAAGAGAAGCGGAGGTCTCGTCTGCATAAACAAGGGATCTTGGGAACACAGCCAGCCTTACAGACGCCGGGACCTCAGCCCCCTGGCATCCCACAGGTGGCTGCTGCCATGGGCCAGGCACAGCCTGTGAGGCCTCCCA
Seq A exon
ATGGGCCTATGTCCATGACAACTGTGCCTATAAGTCGTATGCAGGTTTCTCAAG
Seq C2 exon
GAATGAATCAGTTTAACCCCATGTCCATAGGGAATGTACAGATGCCACAAGCACCCATGGGACCCCGTGCAGCTTCTCCAATGAACCATCCTGTACAGATGAACAACATGGGCGCTGTTCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-'10-13,'10-12,11-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=29.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACAGCCAGCCTTACAG
R:
TGTGGCATCTGTACATTCCCT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]