RnoEX6046242 @ rn6
Exon Skipping
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11682391-11685156:+
Coord C1 exon
chr10:11682391-11682562
Coord A exon
chr10:11683115-11683159
Coord C2 exon
chr10:11685032-11685156
Length
45 bp
Sequences
Splice sites
3' ss Seq
TACATTTTCCCTCCTTATAGATG
3' ss Score
10.35
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GATGAATACTATCATTTATTAGCAGAGAAAATCTATAAAATACAAAAAGAACTAGAAGAAAAACGAAGGTCACGTTTACATAAGCAAGGCATCCTGGGTAACCAGCCAGCATTACCAGCTCCTGGGGCTCAGCCCCCTGTGATCCCACCAACCCAGTCTGTGAGACCTCCAA
Seq A exon
ATGGGCCCCTGTCTTTGCCAGTGAATCGTGTGCAGGTTTCTCAAG
Seq C2 exon
GAATGAATTCATTTAACCCAATGTCCCTGGGGAACGTCCAGTTGCCACAGGCACCCATGGGACCTCGCGCAGCCTCCCCCATGAACCACTCTGTCCAGATGAACAGCATGGCCTCAGTTCCGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAACCCAGTCTGTGAGA
R:
GCCATGCTGTTCATCTGGACA
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]