DreEX6099439 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26905925-26907958:+
Coord C1 exon
chr22:26905925-26905992
Coord A exon
chr22:26906207-26906269
Coord C2 exon
chr22:26907846-26907958
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATCTAATGCTTCTTTTTCAGATG
3' ss Score
9.46
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GACGAGTACTATCACTTTCTGGCAGAGAAGATCTATAAGATCCAGAAAGAGCTGGAAGAGAAGAGAAG
Seq A exon
ATGGACCCGTGCCTATGCCCAATGTGCCAAATCAGATCCTGAATCGCATGCAGGTGTCTCAAG
Seq C2 exon
GGATGAATCCATTTAGTGCAATGTCCAATGTGCCGATGTCTCAGGCTCCCATGGGAACACGTGCCGCCTCTCCGATCAACCATCAACAGATCAACATGAACCAAGTCCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609-'9-16,'9-15,12-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.976 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=82.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTTCTGGCAGAGAAGATCT
R:
TTGATGGTTGATCGGAGAGGC
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]