HsaEX0017199 @ hg19
Exon Skipping
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:2348]
Coordinates
chr16:3824570-3828183:-
Coord C1 exon
chr16:3828012-3828183
Coord A exon
chr16:3827614-3827658
Coord C2 exon
chr16:3824570-3824694
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTGCCACCATAGATG
3' ss Score
7.81
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GATGAATATTATCACTTATTAGCAGAGAAAATCTACAAGATACAAAAAGAACTAGAAGAAAAACGGAGGTCGCGTTTACATAAACAAGGCATCTTGGGGAACCAGCCAGCCTTACCAGCCCCGGGGGCTCAGCCCCCTGTGATTCCACAGGCACAACCTGTGAGACCTCCAA
Seq A exon
ATGGACCCCTGTCCCTGCCAGTGAATCGCATGCAAGTTTCTCAAG
Seq C2 exon
GGATGAATTCATTTAACCCCATGTCCTTGGGGAACGTCCAGTTGCCACAAGCACCCATGGGACCTCGTGCAGCCTCCCCAATGAACCACTCTGTCCAGATGAACAGCATGGGCTCAGTGCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.741 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCCCCTGTGATTCCA
R:
GGACAGAGTGGTTCATTGGGG
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)