BtaEX6108697 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14251630-14252232:-
Coord C1 exon
chr25:14252111-14252232
Coord A exon
chr25:14251919-14251988
Coord C2 exon
chr25:14251630-14251790
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCCCTGTGTCTCAAGGTA
3' ss Score
8.87
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TCGGGCAAGCTGGACGCCTTCCTGGTTCTAGAGCAGCTGCGGTGCAACGGGGTCTTGGAAGGCATCCGAATCTGCCGCCAGGGCTTCCCCAACAGGATCGTCTTCCAGGAGTTCCGCCAACG
Seq A exon
GTACGAGATCCTGGCCGCCAACGCCATTCCCAAAGGCTTCATGGATGGGAAGCAGGCCTGCATCCTGATG
Seq C2 exon
ATCAAAGCCCTGGAACTCGACCCTAACTTGTACAGGATCGGGCAGAGCAAAATCTTCTTCCGAACCGGGGTCCTGGCCCACCTGGAAGAGGAGCGAGACCTAAAGATCACCGACGTCATCATGGCCTTCCAGGCGATGTGTCGCGGCTACCTGGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAACAGGATCGTCTTCC
R:
CTGGAAGGCCATGATGACGTC
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]