MmuEX6060970 @ mm10
Exon Skipping
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14223496-14224099:-
Coord C1 exon
chr16:14223978-14224099
Coord A exon
chr16:14223816-14223885
Coord C2 exon
chr16:14223496-14223656
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCCTGTGTTTTAAGCTA
3' ss Score
8.33
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TCTGGCAAGCTGGATGCATTTCTAGTGCTGGAACAGCTGCGCTGCAACGGTGTGTTGGAAGGCATCCGCATCTGCCGTCAGGGCTTCCCCAACAGGATTGTCTTCCAAGAGTTCCGGCAACG
Seq A exon
CTATGAGATCCTGGCAGCGAACGCCATCCCCAAAGGCTTCATGGATGGAAAGCAAGCCTGCATTCTCATG
Seq C2 exon
ATCAAAGCCCTCGAACTTGACCCTAACCTGTACAGGATTGGGCAGAGCAAAATCTTCTTCCGAACGGGGGTCCTGGCCCACCTAGAGGAGGAACGAGACCTGAAAATTACTGATGTCATCATGGCCTTCCAGGCAATGTGTCGTGGCTACCTTGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-'34-32,'34-31,35-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAGCTGGATGCATTTCT
R:
GCTCTGCCCAATCCTGTACAG
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types