RnoEX0056986 @ rn6
Exon Skipping
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:822068-822670:+
Coord C1 exon
chr10:822068-822189
Coord A exon
chr10:822281-822350
Coord C2 exon
chr10:822510-822670
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCCTGTGTTTTAAGCTA
3' ss Score
8.33
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TCTGGCAAGCTGGATGCATTTCTAGTTCTGGAGCAGCTGCGGTGCAATGGTGTGTTGGAAGGCATCCGCATCTGCCGTCAGGGCTTCCCCAACAGGATTGTCTTCCAAGAGTTCCGGCAACG
Seq A exon
CTACGAGATCCTGGCAGCGAACGCCATCCCCAAAGGCTTCATGGACGGAAAGCAAGCCTGCATTCTCATG
Seq C2 exon
ATCAAAGCCCTTGAACTTGACCCCAATCTGTACAGGATTGGGCAGAGCAAAATCTTCTTTCGTACGGGAGTCCTGGCCCACCTAGAGGAAGAACGAGACCTGAAGATTACTGATGTCATCATGGCTTTCCAGGCAATGTGTCGTGGCTACCTGGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-'34-37,'34-36,35-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCCCAACAGGATTGTC
R:
GCCTGGAAAGCCATGATGACA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]