GgaEX7008759 @ galGal4
Exon Skipping
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7576199-7576805:-
Coord C1 exon
chr14:7576684-7576805
Coord A exon
chr14:7576499-7576568
Coord C2 exon
chr14:7576199-7576359
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACATCTGTGTCTTCTGGCAGATA
3' ss Score
10.74
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GCTGGCAAACTTGATGCCCATTTAGTGCTGGAGCAGTTGCGCTGCAATGGTGTCTTGGAAGGTATTCGTATCTGCCGGCAAGGGTTCCCCAACAGGATTGTCTTCCAGGAATTCCGTCAGCG
Seq A exon
ATACGAAATTCTTGCTGCAAATGCTATTCCTAAAGGATTCATGGATGGGAAGCAGGCTTGCATACTGATG
Seq C2 exon
ATCAAAGCACTGGAACTTGATCCCAACTTGTACAGAATTGGACAGAGTAAAATCTTCTTCAGAACTGGTGTTCTGGCACACCTGGAAGAAGAGAGAGACCTGAAGATCACAGATGTCATTATTGCCTTCCAGGCTCAGTGCCGAGGCTACCTGGCGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-'26-21,'26-20,27-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.5=100)
A:
PF0006316=Myosin_head=FE(3.7=100)
C2:
PF0006316=Myosin_head=PD(3.3=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCAATGGTGTCTTGGAA
R:
TCTTCTTCCAGGTGTGCCAGA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]