DreEX6017879 @ danRer10
Exon Skipping
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36553513-36555273:-
Coord C1 exon
chr3:36555152-36555273
Coord A exon
chr3:36553783-36553852
Coord C2 exon
chr3:36553513-36553673
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGATATTAATAAATTTCTAGCTA
3' ss Score
3.68
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCTGGCAAGATAGATGCCCATCTTGTTCTAGACCAGCTGAGCTGTAATGGTGTACTAGAAGGGATCCGCATTTGTCGCCAGGGCTTCCCTAATCGTATCGTCTTTCATGAGTTTCGCCAGCG
Seq A exon
CTATGAGGTTCTTGCTGCCGGTTCCATTCCTAAAGGTTTCATGGATGGAAAACAATCCTGTACGCTTATG
Seq C2 exon
ATTAAACATCTAGACTTGGACCCAAACCTGTATCGGATTGGTCTGAGCAAGATATTCTTCCGCACAGGAGTGTTGGCACAGCTGGAGGAAGAACGAGACCTGAAACTGACTGATATTATAATAGCCTTCCAGGCCCAGGCCCGTGGTTTTCTTGGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=PD(3.0=37.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGGATCCGCATTTGTCG
R:
AGGTCTCGTTCTTCCTCCAGC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]